Dashboard
Column
Screened (Target): 1282 (1500)
Enrolled (Target): 498 (609)
Average screened per month
137Average enrolled per month
52Column
Study Flow & Monthly Cascade (Cumulative Numbers), Updated on 2023-05-09
Daily trend of screening and enrollment
Monthly trend of screening and enrollment
Column
Follow-up status at enroll and follow-up visits (Cumulative Numbers)
Follow-up status by number of visits (Head count)
% of number of visits at each follow-up month
Study Data
Column
Characteristics
| HPV Result | ||
|---|---|---|---|
Characteristic | Total N = 12331 | Positive 519 (42.1)1 | Negative 714 (57.9)1 |
Study Strata | |||
FSW <30 HIV- | 450 (41.4) | 201 (44.3) | 249 (39.4) |
FSW <30 HIV+ | 33 (3.0) | 17 (3.7) | 16 (2.5) |
FSW 30+ HIV- | 456 (42.0) | 165 (36.3) | 291 (46.0) |
FSW 30+ HIV+ | 107 (9.9) | 54 (11.9) | 53 (8.4) |
MSM <30 HIV- | 25 (2.3) | 6 (1.3) | 19 (3.0) |
MSM <30 HIV+ | 8 (0.7) | 8 (1.8) | 0 (0.0) |
MSM 30+ HIV- | 4 (0.4) | 0 (0.0) | 4 (0.6) |
MSM 30+ HIV+ | 3 (0.3) | 3 (0.7) | 0 (0.0) |
Missing | 147 | 65 | 82 |
Age category | |||
<30 | 526 (47.9) | 239 (51.8) | 287 (45.0) |
30+ | 573 (52.1) | 222 (48.2) | 351 (55.0) |
Missing | 134 | 58 | 76 |
Gender Category | |||
FSW | 1,181 (96.0) | 496 (95.9) | 685 (96.1) |
MSM | 46 (3.7) | 19 (3.7) | 27 (3.8) |
Other | 1 (0.1) | 0 (0.0) | 1 (0.1) |
Prefer Not To Say | 2 (0.2) | 2 (0.4) | 0 (0.0) |
Missing | 3 | 2 | 1 |
HIV Status | |||
Negative | 1,057 (86.3) | 422 (81.8) | 635 (89.6) |
Positive | 168 (13.7) | 94 (18.2) | 74 (10.4) |
Missing | 8 | 3 | 5 |
1n (%) | |||
GeneXpert Results
Column
LTFU by months & visits
Missing AGE
Missing SEX
# A tibble: 3 × 2
pid sex
<chr> <chr>
1 TSH0708 <NA>
2 TSH0713 <NA>
3 TSH0762 <NA> Missing HIV Status
R Session Info
R version 4.2.2 (2022-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22621)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.utf8
[2] LC_CTYPE=English_United States.utf8
[3] LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.utf8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] flexdashboard_0.6.1 glue_1.6.2 sjlabelled_1.2.0
[4] gtsummary_1.7.1 lubridate_1.9.2 forcats_1.0.0
[7] stringr_1.5.0 dplyr_1.1.2 purrr_1.0.1
[10] readr_2.1.4 tidyr_1.3.0 tibble_3.2.1
[13] ggplot2_3.4.2 tidyverse_2.0.0
loaded via a namespace (and not attached):
[1] fontquiver_0.2.1 fontawesome_0.5.1 insight_0.19.1
[4] httr_1.4.5 rprojroot_2.0.3 tools_4.2.2
[7] bslib_0.4.2 DT_0.27 utf8_1.2.3
[10] R6_2.5.1 lazyeval_0.2.2 colorspace_2.1-0
[13] withr_2.5.0 tidyselect_1.2.0 curl_5.0.0
[16] compiler_4.2.2 textshaping_0.3.6 cli_3.6.1
[19] gt_0.9.0 flextable_0.9.1 xml2_1.3.4
[22] officer_0.6.2 plotly_4.10.1 fontBitstreamVera_0.1.1
[25] labeling_0.4.2 sass_0.4.6 scales_1.2.1
[28] askpass_1.1 systemfonts_1.0.4 digest_0.6.31
[31] foreign_0.8-83 rmarkdown_2.21 gfonts_0.2.0
[34] rio_0.5.29 pkgconfig_2.0.3 htmltools_0.5.5
[37] fastmap_1.1.1 highr_0.10 htmlwidgets_1.6.2
[40] rlang_1.1.1 readxl_1.4.2 rstudioapi_0.14
[43] httpcode_0.3.0 shiny_1.7.4 jquerylib_0.1.4
[46] farver_2.1.1 generics_0.1.3 jsonlite_1.8.4
[49] crosstalk_1.2.0 zip_2.3.0 magrittr_2.0.3
[52] Rcpp_1.0.10 munsell_0.5.0 fansi_1.0.4
[55] gdtools_0.3.3 lifecycle_1.0.3 stringi_1.7.12
[58] yaml_2.3.7 snakecase_0.11.0 grid_4.2.2
[61] promises_1.2.0.1 crayon_1.5.2 haven_2.5.2
[64] hms_1.1.3 knitr_1.42 pillar_1.9.0
[67] uuid_1.1-0 crul_1.3 evaluate_0.21
[70] fontLiberation_0.1.0 data.table_1.14.8 broom.helpers_1.13.0
[73] ggprism_1.0.4 vctrs_0.6.2 tzdb_0.3.0
[76] httpuv_1.6.9 cellranger_1.1.0 openssl_2.0.6
[79] gtable_0.3.3 cachem_1.0.8 openxlsx_4.2.5.2
[82] xfun_0.39 mime_0.12 janitor_2.2.0
[85] xtable_1.8-4 later_1.3.1 ragg_1.2.5
[88] viridisLite_0.4.2 timechange_0.2.0 ellipsis_0.3.2
[91] here_1.0.1 package * version date (UTC) lib source
askpass 1.1 2019-01-13 [1] CRAN (R 4.2.1)
broom.helpers 1.13.0 2023-03-28 [1] CRAN (R 4.2.3)
bslib 0.4.2 2022-12-16 [1] CRAN (R 4.2.2)
cachem 1.0.8 2023-05-01 [1] CRAN (R 4.2.3)
cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.2.1)
cli 3.6.1 2023-03-23 [1] CRAN (R 4.2.3)
colorspace 2.1-0 2023-01-23 [1] CRAN (R 4.2.2)
crayon 1.5.2 2022-09-29 [1] CRAN (R 4.2.1)
crosstalk 1.2.0 2021-11-04 [1] CRAN (R 4.2.1)
crul 1.3 2022-09-03 [1] CRAN (R 4.2.2)
curl 5.0.0 2023-01-12 [1] CRAN (R 4.2.2)
data.table 1.14.8 2023-02-17 [1] CRAN (R 4.2.2)
digest 0.6.31 2022-12-11 [1] CRAN (R 4.2.2)
dplyr * 1.1.2 2023-04-20 [1] CRAN (R 4.2.3)
DT 0.27 2023-01-17 [1] CRAN (R 4.2.2)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.2.1)
evaluate 0.21 2023-05-05 [1] CRAN (R 4.2.2)
fansi 1.0.4 2023-01-22 [1] CRAN (R 4.2.2)
farver 2.1.1 2022-07-06 [1] CRAN (R 4.2.1)
fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.2.2)
flexdashboard * 0.6.1 2023-01-23 [1] CRAN (R 4.2.2)
flextable 0.9.1 2023-04-02 [1] CRAN (R 4.2.3)
fontawesome 0.5.1 2023-04-18 [1] CRAN (R 4.2.3)
fontBitstreamVera 0.1.1 2017-02-01 [1] CRAN (R 4.2.0)
fontLiberation 0.1.0 2016-10-15 [1] CRAN (R 4.2.0)
fontquiver 0.2.1 2017-02-01 [1] CRAN (R 4.2.2)
forcats * 1.0.0 2023-01-29 [1] CRAN (R 4.2.2)
foreign 0.8-83 2022-09-28 [2] CRAN (R 4.2.2)
gdtools 0.3.3 2023-03-27 [1] CRAN (R 4.2.3)
generics 0.1.3 2022-07-05 [1] CRAN (R 4.2.1)
gfonts 0.2.0 2023-01-08 [1] CRAN (R 4.2.2)
ggplot2 * 3.4.2 2023-04-03 [1] CRAN (R 4.2.3)
ggprism 1.0.4 2022-11-04 [1] CRAN (R 4.2.2)
glue * 1.6.2 2022-02-24 [1] CRAN (R 4.2.1)
gt 0.9.0 2023-03-31 [1] CRAN (R 4.2.3)
gtable 0.3.3 2023-03-21 [1] CRAN (R 4.2.3)
gtsummary * 1.7.1 2023-04-27 [1] CRAN (R 4.2.3)
haven 2.5.2 2023-02-28 [1] CRAN (R 4.2.3)
here 1.0.1 2020-12-13 [1] CRAN (R 4.2.1)
highr 0.10 2022-12-22 [1] CRAN (R 4.2.2)
hms 1.1.3 2023-03-21 [1] CRAN (R 4.2.3)
htmltools 0.5.5 2023-03-23 [1] CRAN (R 4.2.3)
htmlwidgets 1.6.2 2023-03-17 [1] CRAN (R 4.2.3)
httpcode 0.3.0 2020-04-10 [1] CRAN (R 4.2.2)
httpuv 1.6.9 2023-02-14 [1] CRAN (R 4.2.2)
httr 1.4.5 2023-02-24 [1] CRAN (R 4.2.2)
insight 0.19.1 2023-03-18 [1] CRAN (R 4.2.3)
janitor 2.2.0 2023-02-02 [1] CRAN (R 4.2.2)
jquerylib 0.1.4 2021-04-26 [1] CRAN (R 4.2.1)
jsonlite 1.8.4 2022-12-06 [1] CRAN (R 4.2.2)
knitr 1.42 2023-01-25 [1] CRAN (R 4.2.2)
labeling 0.4.2 2020-10-20 [1] CRAN (R 4.2.0)
later 1.3.1 2023-05-02 [1] CRAN (R 4.2.3)
lazyeval 0.2.2 2019-03-15 [1] CRAN (R 4.2.1)
lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.2.1)
lubridate * 1.9.2 2023-02-10 [1] CRAN (R 4.2.2)
magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.2.1)
mime 0.12 2021-09-28 [1] CRAN (R 4.2.0)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.2.1)
officer 0.6.2 2023-03-28 [1] CRAN (R 4.2.3)
openssl 2.0.6 2023-03-09 [1] CRAN (R 4.2.3)
openxlsx 4.2.5.2 2023-02-06 [1] CRAN (R 4.2.2)
pillar 1.9.0 2023-03-22 [1] CRAN (R 4.2.3)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.2.1)
plotly 4.10.1 2022-11-07 [1] CRAN (R 4.2.2)
promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.2.1)
purrr * 1.0.1 2023-01-10 [1] CRAN (R 4.2.2)
R6 2.5.1 2021-08-19 [1] CRAN (R 4.2.1)
ragg 1.2.5 2023-01-12 [1] CRAN (R 4.2.2)
Rcpp 1.0.10 2023-01-22 [1] CRAN (R 4.2.2)
readr * 2.1.4 2023-02-10 [1] CRAN (R 4.2.2)
readxl 1.4.2 2023-02-09 [1] CRAN (R 4.2.2)
rio 0.5.29 2021-11-22 [1] CRAN (R 4.2.1)
rlang 1.1.1 2023-04-28 [1] CRAN (R 4.2.3)
rmarkdown 2.21 2023-03-26 [1] CRAN (R 4.2.3)
rprojroot 2.0.3 2022-04-02 [1] CRAN (R 4.2.1)
rstudioapi 0.14 2022-08-22 [1] CRAN (R 4.2.1)
sass 0.4.6 2023-05-03 [1] CRAN (R 4.2.2)
scales 1.2.1 2022-08-20 [1] CRAN (R 4.2.1)
sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.2.1)
shiny 1.7.4 2022-12-15 [1] CRAN (R 4.2.2)
sjlabelled * 1.2.0 2022-04-10 [1] CRAN (R 4.2.1)
snakecase 0.11.0 2019-05-25 [1] CRAN (R 4.2.1)
stringi 1.7.12 2023-01-11 [1] CRAN (R 4.2.2)
stringr * 1.5.0 2022-12-02 [1] CRAN (R 4.2.2)
systemfonts 1.0.4 2022-02-11 [1] CRAN (R 4.2.3)
textshaping 0.3.6 2021-10-13 [1] CRAN (R 4.2.1)
tibble * 3.2.1 2023-03-20 [1] CRAN (R 4.2.3)
tidyr * 1.3.0 2023-01-24 [1] CRAN (R 4.2.2)
tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.2.1)
tidyverse * 2.0.0 2023-02-22 [1] CRAN (R 4.2.2)
timechange 0.2.0 2023-01-11 [1] CRAN (R 4.2.2)
tzdb 0.3.0 2022-03-28 [1] CRAN (R 4.2.1)
utf8 1.2.3 2023-01-31 [1] CRAN (R 4.2.2)
uuid 1.1-0 2022-04-19 [1] CRAN (R 4.2.0)
vctrs 0.6.2 2023-04-19 [1] CRAN (R 4.2.3)
viridisLite 0.4.2 2023-05-02 [1] CRAN (R 4.2.2)
withr 2.5.0 2022-03-03 [1] CRAN (R 4.2.2)
xfun 0.39 2023-04-20 [1] CRAN (R 4.2.3)
xml2 1.3.4 2023-04-27 [1] CRAN (R 4.2.3)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.2.1)
yaml 2.3.7 2023-01-23 [1] CRAN (R 4.2.2)
zip 2.3.0 2023-04-17 [1] CRAN (R 4.2.3)
[1] C:/Users/drmyo/AppData/Local/R/win-library/4.2
[2] C:/Program Files/R/R-4.2.2/library