Dashboard

Column

Screened (Target): 1282 (1500)

Enrolled (Target): 498 (609)

Average screened per month

137

Average enrolled per month

52

Column

Study Flow & Monthly Cascade (Cumulative Numbers), Updated on 2023-05-09

Daily trend of screening and enrollment

Monthly trend of screening and enrollment

Column

Follow-up status at enroll and follow-up visits (Cumulative Numbers)

Follow-up status by number of visits (Head count)

% of number of visits at each follow-up month

Study Data

Column

Characteristics

HPV Result

Characteristic

Total N = 12331

Positive 519 (42.1)1

Negative 714 (57.9)1

Study Strata

FSW <30 HIV-

450 (41.4)

201 (44.3)

249 (39.4)

FSW <30 HIV+

33 (3.0)

17 (3.7)

16 (2.5)

FSW 30+ HIV-

456 (42.0)

165 (36.3)

291 (46.0)

FSW 30+ HIV+

107 (9.9)

54 (11.9)

53 (8.4)

MSM <30 HIV-

25 (2.3)

6 (1.3)

19 (3.0)

MSM <30 HIV+

8 (0.7)

8 (1.8)

0 (0.0)

MSM 30+ HIV-

4 (0.4)

0 (0.0)

4 (0.6)

MSM 30+ HIV+

3 (0.3)

3 (0.7)

0 (0.0)

Missing

147

65

82

Age category

<30

526 (47.9)

239 (51.8)

287 (45.0)

30+

573 (52.1)

222 (48.2)

351 (55.0)

Missing

134

58

76

Gender Category

FSW

1,181 (96.0)

496 (95.9)

685 (96.1)

MSM

46 (3.7)

19 (3.7)

27 (3.8)

Other

1 (0.1)

0 (0.0)

1 (0.1)

Prefer Not To Say

2 (0.2)

2 (0.4)

0 (0.0)

Missing

3

2

1

HIV Status

Negative

1,057 (86.3)

422 (81.8)

635 (89.6)

Positive

168 (13.7)

94 (18.2)

74 (10.4)

Missing

8

3

5

1n (%)

GeneXpert Results

Column

LTFU by months & visits

Missing AGE

Missing SEX

# A tibble: 3 × 2
  pid     sex  
  <chr>   <chr>
1 TSH0708 <NA> 
2 TSH0713 <NA> 
3 TSH0762 <NA> 

Missing HIV Status

R Session Info

R version 4.2.2 (2022-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22621)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.utf8 
[2] LC_CTYPE=English_United States.utf8   
[3] LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.utf8    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] flexdashboard_0.6.1 glue_1.6.2          sjlabelled_1.2.0   
 [4] gtsummary_1.7.1     lubridate_1.9.2     forcats_1.0.0      
 [7] stringr_1.5.0       dplyr_1.1.2         purrr_1.0.1        
[10] readr_2.1.4         tidyr_1.3.0         tibble_3.2.1       
[13] ggplot2_3.4.2       tidyverse_2.0.0    

loaded via a namespace (and not attached):
 [1] fontquiver_0.2.1        fontawesome_0.5.1       insight_0.19.1         
 [4] httr_1.4.5              rprojroot_2.0.3         tools_4.2.2            
 [7] bslib_0.4.2             DT_0.27                 utf8_1.2.3             
[10] R6_2.5.1                lazyeval_0.2.2          colorspace_2.1-0       
[13] withr_2.5.0             tidyselect_1.2.0        curl_5.0.0             
[16] compiler_4.2.2          textshaping_0.3.6       cli_3.6.1              
[19] gt_0.9.0                flextable_0.9.1         xml2_1.3.4             
[22] officer_0.6.2           plotly_4.10.1           fontBitstreamVera_0.1.1
[25] labeling_0.4.2          sass_0.4.6              scales_1.2.1           
[28] askpass_1.1             systemfonts_1.0.4       digest_0.6.31          
[31] foreign_0.8-83          rmarkdown_2.21          gfonts_0.2.0           
[34] rio_0.5.29              pkgconfig_2.0.3         htmltools_0.5.5        
[37] fastmap_1.1.1           highr_0.10              htmlwidgets_1.6.2      
[40] rlang_1.1.1             readxl_1.4.2            rstudioapi_0.14        
[43] httpcode_0.3.0          shiny_1.7.4             jquerylib_0.1.4        
[46] farver_2.1.1            generics_0.1.3          jsonlite_1.8.4         
[49] crosstalk_1.2.0         zip_2.3.0               magrittr_2.0.3         
[52] Rcpp_1.0.10             munsell_0.5.0           fansi_1.0.4            
[55] gdtools_0.3.3           lifecycle_1.0.3         stringi_1.7.12         
[58] yaml_2.3.7              snakecase_0.11.0        grid_4.2.2             
[61] promises_1.2.0.1        crayon_1.5.2            haven_2.5.2            
[64] hms_1.1.3               knitr_1.42              pillar_1.9.0           
[67] uuid_1.1-0              crul_1.3                evaluate_0.21          
[70] fontLiberation_0.1.0    data.table_1.14.8       broom.helpers_1.13.0   
[73] ggprism_1.0.4           vctrs_0.6.2             tzdb_0.3.0             
[76] httpuv_1.6.9            cellranger_1.1.0        openssl_2.0.6          
[79] gtable_0.3.3            cachem_1.0.8            openxlsx_4.2.5.2       
[82] xfun_0.39               mime_0.12               janitor_2.2.0          
[85] xtable_1.8-4            later_1.3.1             ragg_1.2.5             
[88] viridisLite_0.4.2       timechange_0.2.0        ellipsis_0.3.2         
[91] here_1.0.1             
 package           * version date (UTC) lib source
 askpass             1.1     2019-01-13 [1] CRAN (R 4.2.1)
 broom.helpers       1.13.0  2023-03-28 [1] CRAN (R 4.2.3)
 bslib               0.4.2   2022-12-16 [1] CRAN (R 4.2.2)
 cachem              1.0.8   2023-05-01 [1] CRAN (R 4.2.3)
 cellranger          1.1.0   2016-07-27 [1] CRAN (R 4.2.1)
 cli                 3.6.1   2023-03-23 [1] CRAN (R 4.2.3)
 colorspace          2.1-0   2023-01-23 [1] CRAN (R 4.2.2)
 crayon              1.5.2   2022-09-29 [1] CRAN (R 4.2.1)
 crosstalk           1.2.0   2021-11-04 [1] CRAN (R 4.2.1)
 crul                1.3     2022-09-03 [1] CRAN (R 4.2.2)
 curl                5.0.0   2023-01-12 [1] CRAN (R 4.2.2)
 data.table          1.14.8  2023-02-17 [1] CRAN (R 4.2.2)
 digest              0.6.31  2022-12-11 [1] CRAN (R 4.2.2)
 dplyr             * 1.1.2   2023-04-20 [1] CRAN (R 4.2.3)
 DT                  0.27    2023-01-17 [1] CRAN (R 4.2.2)
 ellipsis            0.3.2   2021-04-29 [1] CRAN (R 4.2.1)
 evaluate            0.21    2023-05-05 [1] CRAN (R 4.2.2)
 fansi               1.0.4   2023-01-22 [1] CRAN (R 4.2.2)
 farver              2.1.1   2022-07-06 [1] CRAN (R 4.2.1)
 fastmap             1.1.1   2023-02-24 [1] CRAN (R 4.2.2)
 flexdashboard     * 0.6.1   2023-01-23 [1] CRAN (R 4.2.2)
 flextable           0.9.1   2023-04-02 [1] CRAN (R 4.2.3)
 fontawesome         0.5.1   2023-04-18 [1] CRAN (R 4.2.3)
 fontBitstreamVera   0.1.1   2017-02-01 [1] CRAN (R 4.2.0)
 fontLiberation      0.1.0   2016-10-15 [1] CRAN (R 4.2.0)
 fontquiver          0.2.1   2017-02-01 [1] CRAN (R 4.2.2)
 forcats           * 1.0.0   2023-01-29 [1] CRAN (R 4.2.2)
 foreign             0.8-83  2022-09-28 [2] CRAN (R 4.2.2)
 gdtools             0.3.3   2023-03-27 [1] CRAN (R 4.2.3)
 generics            0.1.3   2022-07-05 [1] CRAN (R 4.2.1)
 gfonts              0.2.0   2023-01-08 [1] CRAN (R 4.2.2)
 ggplot2           * 3.4.2   2023-04-03 [1] CRAN (R 4.2.3)
 ggprism             1.0.4   2022-11-04 [1] CRAN (R 4.2.2)
 glue              * 1.6.2   2022-02-24 [1] CRAN (R 4.2.1)
 gt                  0.9.0   2023-03-31 [1] CRAN (R 4.2.3)
 gtable              0.3.3   2023-03-21 [1] CRAN (R 4.2.3)
 gtsummary         * 1.7.1   2023-04-27 [1] CRAN (R 4.2.3)
 haven               2.5.2   2023-02-28 [1] CRAN (R 4.2.3)
 here                1.0.1   2020-12-13 [1] CRAN (R 4.2.1)
 highr               0.10    2022-12-22 [1] CRAN (R 4.2.2)
 hms                 1.1.3   2023-03-21 [1] CRAN (R 4.2.3)
 htmltools           0.5.5   2023-03-23 [1] CRAN (R 4.2.3)
 htmlwidgets         1.6.2   2023-03-17 [1] CRAN (R 4.2.3)
 httpcode            0.3.0   2020-04-10 [1] CRAN (R 4.2.2)
 httpuv              1.6.9   2023-02-14 [1] CRAN (R 4.2.2)
 httr                1.4.5   2023-02-24 [1] CRAN (R 4.2.2)
 insight             0.19.1  2023-03-18 [1] CRAN (R 4.2.3)
 janitor             2.2.0   2023-02-02 [1] CRAN (R 4.2.2)
 jquerylib           0.1.4   2021-04-26 [1] CRAN (R 4.2.1)
 jsonlite            1.8.4   2022-12-06 [1] CRAN (R 4.2.2)
 knitr               1.42    2023-01-25 [1] CRAN (R 4.2.2)
 labeling            0.4.2   2020-10-20 [1] CRAN (R 4.2.0)
 later               1.3.1   2023-05-02 [1] CRAN (R 4.2.3)
 lazyeval            0.2.2   2019-03-15 [1] CRAN (R 4.2.1)
 lifecycle           1.0.3   2022-10-07 [1] CRAN (R 4.2.1)
 lubridate         * 1.9.2   2023-02-10 [1] CRAN (R 4.2.2)
 magrittr            2.0.3   2022-03-30 [1] CRAN (R 4.2.1)
 mime                0.12    2021-09-28 [1] CRAN (R 4.2.0)
 munsell             0.5.0   2018-06-12 [1] CRAN (R 4.2.1)
 officer             0.6.2   2023-03-28 [1] CRAN (R 4.2.3)
 openssl             2.0.6   2023-03-09 [1] CRAN (R 4.2.3)
 openxlsx            4.2.5.2 2023-02-06 [1] CRAN (R 4.2.2)
 pillar              1.9.0   2023-03-22 [1] CRAN (R 4.2.3)
 pkgconfig           2.0.3   2019-09-22 [1] CRAN (R 4.2.1)
 plotly              4.10.1  2022-11-07 [1] CRAN (R 4.2.2)
 promises            1.2.0.1 2021-02-11 [1] CRAN (R 4.2.1)
 purrr             * 1.0.1   2023-01-10 [1] CRAN (R 4.2.2)
 R6                  2.5.1   2021-08-19 [1] CRAN (R 4.2.1)
 ragg                1.2.5   2023-01-12 [1] CRAN (R 4.2.2)
 Rcpp                1.0.10  2023-01-22 [1] CRAN (R 4.2.2)
 readr             * 2.1.4   2023-02-10 [1] CRAN (R 4.2.2)
 readxl              1.4.2   2023-02-09 [1] CRAN (R 4.2.2)
 rio                 0.5.29  2021-11-22 [1] CRAN (R 4.2.1)
 rlang               1.1.1   2023-04-28 [1] CRAN (R 4.2.3)
 rmarkdown           2.21    2023-03-26 [1] CRAN (R 4.2.3)
 rprojroot           2.0.3   2022-04-02 [1] CRAN (R 4.2.1)
 rstudioapi          0.14    2022-08-22 [1] CRAN (R 4.2.1)
 sass                0.4.6   2023-05-03 [1] CRAN (R 4.2.2)
 scales              1.2.1   2022-08-20 [1] CRAN (R 4.2.1)
 sessioninfo         1.2.2   2021-12-06 [1] CRAN (R 4.2.1)
 shiny               1.7.4   2022-12-15 [1] CRAN (R 4.2.2)
 sjlabelled        * 1.2.0   2022-04-10 [1] CRAN (R 4.2.1)
 snakecase           0.11.0  2019-05-25 [1] CRAN (R 4.2.1)
 stringi             1.7.12  2023-01-11 [1] CRAN (R 4.2.2)
 stringr           * 1.5.0   2022-12-02 [1] CRAN (R 4.2.2)
 systemfonts         1.0.4   2022-02-11 [1] CRAN (R 4.2.3)
 textshaping         0.3.6   2021-10-13 [1] CRAN (R 4.2.1)
 tibble            * 3.2.1   2023-03-20 [1] CRAN (R 4.2.3)
 tidyr             * 1.3.0   2023-01-24 [1] CRAN (R 4.2.2)
 tidyselect          1.2.0   2022-10-10 [1] CRAN (R 4.2.1)
 tidyverse         * 2.0.0   2023-02-22 [1] CRAN (R 4.2.2)
 timechange          0.2.0   2023-01-11 [1] CRAN (R 4.2.2)
 tzdb                0.3.0   2022-03-28 [1] CRAN (R 4.2.1)
 utf8                1.2.3   2023-01-31 [1] CRAN (R 4.2.2)
 uuid                1.1-0   2022-04-19 [1] CRAN (R 4.2.0)
 vctrs               0.6.2   2023-04-19 [1] CRAN (R 4.2.3)
 viridisLite         0.4.2   2023-05-02 [1] CRAN (R 4.2.2)
 withr               2.5.0   2022-03-03 [1] CRAN (R 4.2.2)
 xfun                0.39    2023-04-20 [1] CRAN (R 4.2.3)
 xml2                1.3.4   2023-04-27 [1] CRAN (R 4.2.3)
 xtable              1.8-4   2019-04-21 [1] CRAN (R 4.2.1)
 yaml                2.3.7   2023-01-23 [1] CRAN (R 4.2.2)
 zip                 2.3.0   2023-04-17 [1] CRAN (R 4.2.3)

 [1] C:/Users/drmyo/AppData/Local/R/win-library/4.2
 [2] C:/Program Files/R/R-4.2.2/library